Global Cooling Event 4,200 Years Ago Spurred Rice's Evolution, Spread Across Asia

May 18, 2020

A major global cooling event that occurred 4,200 years ago may have led to the evolution of new rice varieties and the spread of rice into both northern and southern Asia, an international team of researchers has found.

Their study, published in Nature Plants and led by the NYU Center for Genomics and Systems Biology, uses a multidisciplinary approach to reconstruct the history of rice and trace its migration throughout Asia.

Rice is one of the most important crops worldwide, a staple for more than half of the global population. It was first cultivated 9,000 years ago in the Yangtze Valley in China and later spread across East, Southeast, and South Asia, followed by the Middle East, Africa, Europe, and the Americas. In the process, rice evolved and adapted to different environments, but little is known about the routes, timing, and environmental forces involved in this spread.

In their study, the researchers reconstructed the historical movement of rice across Asia using whole-genome sequences of more than 1,400 varieties of rice--including varieties of japonica and indica, two main subspecies of Asian rice--coupled with geography, archaeology, and historical climate data.

For the first 4,000 years of its history, farming rice was largely confined to China, and japonica was the subspecies grown. Then, a global cooling event 4,200 years ago--also known as the 4.2k event, which is thought to have had widespread consequences, including the collapse of civilizations from Mesopotamia to China--coincided with japonica rice diversifying into temperate and tropical varieties. The newly evolved temperate varieties spread in northern China, Korea and Japan, while the tropical varieties and spread to Southeast Asia.

"This abrupt climate change forced plants, including crops, to adapt," said Rafal M. Gutaker, a postdoctoral associate at the NYU Center for Genomics and Systems Biology and the study's lead author. "Our genomic data, as well as paleoclimate modeling by our collaborators, show that the cooling event occurred at the same time as the rise of temperate japonica, which grows in milder regions. This cooling event also may have led to the migration of rice agriculture and farmer communities into Southeast Asia."

"These findings were then backed up by data from archaeological rice remains excavated in Asia, which also showed that after the 4.2k event, tropical rice migrated south while rice also adapted to northern latitudes as temperate varieties," said Michael D. Purugganan, the Silver Professor of Biology at NYU, who led the study.

After the global cooling event, tropical japonica rice continued to diversify. It reached islands in Southeast Asia about 2,500 years ago, likely due to extensive trade networks and the movement of goods and peoples in the region--a finding also supported by archeological data.

The spread of indica rice was more recent and more complicated; after originating in India's lower Ganges Valley roughly 4,000 years ago, the researchers traced its migration from India into China approximately 2,000 years ago.

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Video: Why Your Food Future Could be Trapped in a Seed Morgue

In a world of PowerPoint overload, Rex Bernardo stands out. No bullet points. No charts. No jargon. Just stories and photographs. At this year’s National Association for Plant Breeding conference on the Big Island of Hawaii, he stood before a room of peers — all experts in the science of seeds — and did something radical: he showed them images. He told them stories. And he asked them to remember not what they saw, but how they felt.

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Bernardo practices what he preaches. At the University of Minnesota, he helped launch a student-led breeding program that’s working to adapt leafy African vegetables for the Twin Cities’ African diaspora. The goal? Culturally relevant crops that mature in Minnesota’s shorter growing season — and can be regrown year after year.

“That’s real impact,” he says. “Helping people grow food that’s meaningful to them, not just what's commercially viable.”

He’s also brewed plant breeding into something more relatable — literally. Coffee and beer have become unexpected tools in his mission to make science accessible. His undergraduate course on coffee, for instance, connects the dots between genetics, geography, and culture. “Everyone drinks coffee,” he says. “It’s a conversation starter. It’s a gateway into plant science.”