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Gut Reactions: U of G Study Finds Food Dyes Can Harm Gut Microbes

Food dyes might make food look more appealing, but their safety has long been controversial. New research from the University of Guelph reveals an unexpected way these compounds may be harming health: by disrupting the microbial communities in the gut.  

In two new recently published papers, researchers from the College of Biological Science found that commonly used food dyes can break down in the gut to create potentially toxic byproducts.

Our gut microbiomes contain bacteria, fungi and other microbes that help break down food and stimulate our immune systems. Imbalances between good and bad microbes have been shown to result in several health issues, says Dr. Emma Allen-Vercoe, professor in the Department of Molecular and Cellular Biology (MCB).  

“I don’t think that anyone realizes how fragile the gut microbiome is,” says Allen-Vercoe, Canada Research Chair in Human Gut Microbiome Function and Host Interactions.  

“Why are so many of us missing certain microbes, and how did we lose them? One potential reason is all the artificial stuff we put into our food, including food colourants, which few people have looked at.”  

Allen-Vercoe, along with MCB colleague and biochemist Dr. David Josephy, set out to address this knowledge gap by investigating azo food dyes, the class of synthetic dyes commonly used in food, drugs and cosmetics. 

Allen-Vercoe’s team wanted to investigate how bacteria in the human gut metabolize or “reduce” azo dyes, and how the resulting compounds impact the growth of gut bacteria. 

Four azo dyes are currently approved for human consumption in Canada: amaranth, sunset yellow, allura red and tartrazine. Many others are banned as a result of unacceptable toxicity.   

Food dyes’ interaction with gut microbiome not well tested

While azo dyes have been tested for effects on animal cells, where they tend to be inert, their interactions with microbial cells have been mostly ignored and were not considered in the drafting of current food dye use regulations. That’s despite the fact that there is evidence azo dyes can be reduced by gut bacteria to create new metabolites that may be toxic. 

“Bacteria in particular have had many eons longer than we have had to evolve. Consequently, they are incredible biochemists and azo dye reduction is not difficult for them” says Allen-Vercoe.   

To evaluate the response of gut microbes to the four azo dyes, Allen-Vercoe’s team grew over 124 human gut bacterial species in culture media infused with one of the four approved dyes.  

Any bacterial strains that could break down the dyes – as revealed by the disappearance of colour from the growth medium – were further tested to assess how well they functioned amid the breakdown products of azo dye reduction.   

The study, published in the journal Anaerobe, revealed that many of the bacterial species typically found in the human gut could extensively reduce the dyes.  

Amaranth was reduced the most frequently by gut bacteria, while tartrazine was reduced the least, although still by a substantial number of strains. In many cases, different strains of the same gut bacterial species showed variability in their reductive capabilities.   

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California Farm Bureau 2025 Farm Dog of the Year Contest Winner - Willy - CAFB 107th Annual Meeting

Video: California Farm Bureau 2025 Farm Dog of the Year Contest Winner - Willy - CAFB 107th Annual Meeting

Meet Willy: California Farm Bureau’s 2025 Farm Dog of the Year!

We’re excited to introduce Willy, a miniature long-haired dachshund with a big heart and even bigger courage, and the Grand Prize winner of this year’s Farm Dog of the Year Contest!

Willy may be small, but he’s become an indispensable partner on owner Marshal Hagedorn’s forestry and cattle operations in Shasta, Tehama, and Siskiyou counties. Adopted in 2023, he quickly found his place on the ranch, helping manage critters, tagging along for long days in the woods, and offering unwavering companionship during demanding logging work.

Willy has even taken naturally to moving cattle, surprising calves (and more than a few full-grown cows!) with his burst of energy from the tall grass. As Marshal put it: “He goes with me everywhere every single day.”

Congratulations to Willy and his family, a perfect example of how every good farm dog, no matter the size, helps keep California agriculture running strong.